VISDB Viral Integration Site DataBase

VIS ID

TVIS42001103

Fusion event

EBV-STAC2 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Hodgkin lymphoma (HL)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

8604

Orient

-

Integrated sequence

TCCCTGCCTGGGACACATCTTAATAACCCCAGTATCATATTGCACTAGGATTATGTGTTGCCCATAGCCATAAATTCGTGTGAGATGGACATCCAGTCTT| |TACGGCTTGTCCCCACCCCATGGATTTCTATTGTTAAAGATATTCAGAATGTTTCATTCCTACACTAGTATTTATTGCCCAAGGGGTTTGTGAGGGTTAT

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

37376009/39219756 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4480 ; hsa-mir-4258 ; hsa-mir-3691-3p ; hsa-mir-6729-3p ; hsa-mir-5588-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-1180/Upstream/304714; hsa-mir-10226/Downstream/77644;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/9470, chr17-CpG: 151/Downstream/4944

Upstream sequence

ACAGTGTCTTCCCAActgggcatggtggcgcatgcctgtggtcccagctactagggaggctgaggtgggaggatcacttgagcccaggaggtcgaggcgg

Downstream sequence

ACCTCTTGACCCAGAGCCTTGGCCGTCTCCCTTCCCGTTGAGAGGCGGCTTACCCCTGCCCACTCCTTTCTATTAGAGACAGAAACAGGGGCCAGCAGCC