Basic Information
VIS ID
TVIS42001108
Fusion event
EBV-chr1:p36.12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
NK/T cell lymphoma (NKL)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
92060
Orient
+
Integrated sequence
GTCGGGCTCGGGAGACTTTCGAGTTCATCTGTAAAAGCATGAAACTGTCCGGACTCCGAGTAGCGGGCCTCGGTGTGAGAGGCACCCCCATCATTCCCCA| |TGAGCTCCTCGTCCATCCTGTCGGCTCCGGACACGAGGATAGGAGTTTCCACTGCCTTGGACTTGGTTGACAGCAGGCACGCGGGAAGCACGCCGCTCAC
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
20883897/20557404 (Hg38)
End
20883897/20557404 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1660256; hsa-mir-101-1/Downstream/76275;
Nearest TSS
ENST00000473358/Upstream/4965; ENST00000461985/Downstream/31544;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3402, chr1-CpG: 69/Downstream/75967
Nearby gene
FAM43B(-2384) ;
Upstream sequence
aggggaacatggaatgagtggtggaagtcgacagcaattattaccatctcaggcctcatgaccagatagggtggcaagaactgtTGAATCTGTTTTATTA
Downstream sequence
CTTGACCATTTCCTTTGTACTCTTTTTTTCTCCACACTTCCTTATATAAAGAATACCAGCAGTAACAAACATTTAGCTCCCAACTTGGATTATAAGTTGG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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