Basic Information
VIS ID
TVIS42001109
Fusion event
EBV-chr1:p36.12 integration
Validated
Yes
Detection method
Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
NK/T cell lymphoma (NKL)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
91652
Orient
-
Integrated sequence
ATCCTCTTTGGCTGACACACCTCTCGCCCCTCGAACACGTCAGATATGGCACTGCCCGCTTCCGGCTTTGGCAGGAACATACCTTCCCGGCTATCCCTGA| |GGCCCTTCTTCCTTTTAACGGGAGGAAGAAAGGTGGGCTTTGAGGGGTGGGGGAATATGGGTCTCTCATCGCTCTCTTGGTGGACCGCTGCTATCCAAGG
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
20883919/20557426 (Hg38)
End
20883919/20557426 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1660278; hsa-mir-101-1/Downstream/76253;
Nearest TSS
ENST00000473358/Upstream/4987; ENST00000461985/Downstream/31522;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3424, chr1-CpG: 69/Downstream/75945
Nearby gene
FAM43B(-2406) ;
Downstream sequence
CTGGGACCTATCTCCGTCTCTTCTGATCCCACTCCAGCAGGGGTGGGCTGT
Junction sequence
CCACCCCTCAAAGCCCACCTTTCTTCCTCCCGTTAAAAGGAAGAAGGGCCTGGGACCTATCTCCGTCTCTTCTGATCCCACTCCAGCAGGGGTGGGCTGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate