Basic Information
VIS ID
TVIS42001110
Fusion event
EBV-chr9:p24.3 integration
Validated
Yes
Detection method
Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
NK/T cell lymphoma (NKL)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
160766
Orient
+
Integrated sequence
GCGGCAGAGGCCTCTCTCGAGTTCTCTAGCAGGTGCACCAGCTCCAGGGACAGGGCGCTGCATGCACGGTCATTCTGCCGTCTCAAACGGGGAAGGAGGA| |TGGCCTCCAGCTCGGCCAGCAGGCCGGCGTTGCGCACCACCGCAGCCACGTCCAGACTCCGGGGGTCCAGCCGGGTGCACACGCTCAGCTCAACCGCCAG
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
773667/773667 (Hg38)
End
773667/773667 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-9/Upstream/743386; hsa-let-7a-1/Downstream/4076630;
Nearest TSS
ENST00000422679/Upstream/38919; ENST00000564322/Downstream/68023;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/66247, chr9-CpG: 16/Downstream/52915
Upstream sequence
TGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTGTCTCAGCCTCCTTAGTA
Junction sequence
TGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTGTCTCAGCCTCCTTAGTACCATGGCCTCCAGCTCGGCCAGCAGGCCGGCGTTGCGCACCACCGCAGCCACG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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