Basic Information
VIS ID
TVIS42001114
Fusion event
EBV-chrX:q26.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
100061
Orient
-
Integrated sequence
AAAGAAGACGTTGAGATGCGTGTAGCCCAGAAGCGTGTAGTTCTCGGTGGTGGAGGCGTAGTCCAGGAGGCCGTGAAGGAGAGGCTCGTCTGAGGTGAAC| |TCTATGTTGTCGCGAATCAGCATGTTGTTGGTAAATGTGCAGAAGGGGAGGTCCCTGAACTCCCTTCCGCCATAGCGGACGGCCACATCCAGGCATTGCC
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
136595580/137513421 (Hg38)
End
136595580/137513421 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/962461; hsa-mir-105-1/Downstream/1154290;
Nearest TSS
ENST00000429181/Upstream/481747; ENST00000478471/Downstream/50504;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/84666, chrX-CpG: 53/Downstream/33964
Upstream sequence
cccacccatctacccacccttccatttatccatccacctctccatccatccatctatccatccacccacccacccatccatccacccatccactgatcca
Downstream sequence
AGGATTTGATGCCATTAATGCTTGTTCACTTGACCTGATTCCAAGTTACTTCAGAAAAAGCTGTAGTAATTCTTCTGGGATACTGACAAGTACTATTGCC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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