Basic Information
VIS ID
TVIS42001115
Fusion event
EBV-chr11:q23.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
99594
Orient
+
Integrated sequence
TGTAAATAAAATGTCATAACCTGGAGTCTGCATGTCTGTTGTTTTATTCAGTAAACCAGTAGTGCGCGTGAGTTCTTTAGGGCATCCACGATGTAGCCGC| |TCGCGGGGTTCCCCTCCCCAGTGATCATCTCGGATAGGGGATTCCTGTCCATGACCACGCAATTAGAGTGCCGGGCCCGGGACAGCGCCACATACACATG
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
116064662/116193945 (Hg38)
End
116064662/116193945 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11G ; FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/2743857; hsa-let-7a-2/Downstream/2450055;
Nearest TSS
ENST00000527297/Upstream/261088; ENST00000439483/Downstream/306685;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/433546, chr11-CpG: 30/Downstream/306597
Upstream sequence
cctacattttttaaatttatttgaccacagaatccttttttcatgctacttctattagcatcccatagaacaagtgttcTAGAGACCCTGGTGTGACCCC
Downstream sequence
TTTCAGAGAGCTTAACTGCCAGGCTCTCCTGAGCCCTGGTGTGtgtttcaagatttgtgcctgggaattgttttaatcaggtatggcaaggtgacagata
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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