Basic Information
VIS ID
TVIS42001120
Fusion event
EBV-chr2:q33.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81658
Orient
-
Integrated sequence
CTGGGCCTATTGTCCGGCCCTGGGAGCCATCCCTGACACAGGCTGCGGGGCAGGCCTTTGCACCCGTTAGACCACAACACATGCCAGTAGAACCCGTCCC| |TGTCCCGACAGTGGCACTTGAGCGACCAGTTTACCCCAAGCCAGTTCGTCCGGCACCTCCTAAGATTGCTATGCAGGGCCCCGGGGAAACTTCTGGCATT
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
197612311/196747587 (Hg38)
End
197612311/196747587 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/7614476; hsa-mir-1244-1/Downstream/10035647;
Nearest TSS
ENST00000437798/Upstream/15490; ENST00000449346/Downstream/19417;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/107753, chr2-CpG: 31/Downstream/51901
Upstream sequence
tttggctgtgttccccacccaaatctcatcttcagttgtagttcccattatccccatgtgtcatgggagggacctggggggaggtaactgaatcatgggg
Downstream sequence
GTGATCCTGTGTTCCCTGCCTTGGACTTCTTTAGACAATAGAGACTTTATAAATCACTTTCTAATTGTAAGCCCTTTTATAAATGGTCAGAAACAATGTA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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