Basic Information
VIS ID
TVIS42001122
Fusion event
EBV-chr2:q33.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7247
Orient
+
Integrated sequence
CACAACATGTAAGGGCCCGCTACCCCTACAACACAAAACAAACTATCTCCCCTAACCATCCTTTTGCCAATCAATTCTGTGACAGGGTTTCCTGGACACC| |CAGTCTTAGTTCAGGTAGACACCCAGTTATGCAGTGCCACCAATTCCAACCATTTTTAAACCTCCTGGAATTCTATCATTAAACGGCATGCAGGAAAAGG
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
200862547/199997824 (Hg38)
End
200862547/199997824 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2I
Nearest miRNA
hsa-mir-10b/Upstream/10864713; hsa-mir-1244-1/Downstream/6785410;
Nearest TSS
ENST00000437798/Upstream/38558; ENST00000471533/Downstream/308057;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/41831, chr2-CpG: 150/Downstream/308653
Upstream sequence
TAGCCAAGACCCCGGAAGTCTCTGCCCAAATGTCCTGAGCCAATTTTCAGG
Junction sequence
TAGCCAAGACCCCGGAAGTCTCTGCCCAAATGTCCTGAGCCAATTTTCAGGTGTCCAGGAAACCCTGTCACAGAATTGATTGGCAAAAGGATGGTTAGGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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