VISDB Viral Integration Site DataBase

VIS ID

TVIS42001123

Fusion event

EBV-CDK15 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Perfect

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

84644

Orient

+

Integrated sequence

CACTGAGTGTCCAGGCTCGGCTGGAGCCATGGCAACCTTTGCCTGGGCCCCAAGTGACAGCAGTTCTACTTCACGAAGAATCCATGCAGGGTGTCCAAGT| |ACATGGTTCGATGCTAGACCTTCTTGAAAAAGACGATGAAGTCATGGAGCAGAGGGTTATGGCAACCCTACTGCCACCAGTACCACAACAGCCCCGGGCT

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

202741026/201876303 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-6867-5p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6782-5p ; hsa-mir-876-3p ; hsa-mir-323a-5p

Nearest miRNA

hsa-mir-10b/Upstream/12743192; hsa-mir-1244-1/Downstream/4906931;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/94871, chr2-CpG: 334/Downstream/156360

Upstream sequence

ATAGGTGACAGGAAAAAGCATAATGATACAAACACGGAAGATGTCAGTAAA

Junction sequence