Basic Information
VIS ID
TVIS42001126
Fusion event
EBV-chr10:q23.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
6955
Orient
-
Integrated sequence
GCTTAACGTTGCATCCCAGAAGATGCACGCTTAACCCCGCCTACAACCGTGACGTAGCTGTTTACCAGCATGTATAGAGTTACGGTTCGCTACATCAAAC| |AGGACAGCCGTTGCCCTAGTGGTTTCGGACACACCGCCAACGCTCAGTGCGGTGCTACCGACCCGAGGTCAAGTCCCGGGGGAGGAGAAGAGAGGCTTCC
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82813738/81053982 (Hg38)
End
82813738/81053982 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/5501429; hsa-mir-107/Downstream/5210712;
Nearest TSS
ENST00000439456/Upstream/404185; ENST00000404547/Downstream/821332;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/517546, chr10-CpG: 149/Downstream/820311
Upstream sequence
TTAATGATTGGCACATTTTGGAGAATTTTAAGGATATAAACAGATTTGAACTTGTTTTAAGGATAtaacccatctgaacctgtttcctcaccagaaatat
Downstream sequence
ggagatgatagttcttgcctggctttcctcccaggtttattgttaaaatTCTAAGGATACAAACACATGGACATGACCAACATATTGAGACAGCCAGGCA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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