Basic Information
VIS ID
TVIS42001127
Fusion event
EBV-chr10:q23.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7066
Orient
+
Integrated sequence
TGCCCTAGTGGTTTCGGACACACCGCCAACGCTCAGTGCGGTGCTACCGACCCGAGGTCAAGTCCCGGGGGAGGAGAAGAGAGGCTTCCCGCCTAGAGCA| |TTTGCAAGTCAGGATTCTCTAATCCCTCTGGGAGAAGGGTATTCGGCTTGTCCGCTATTTTTTTGTGGCTAGTTTTGCACCCACAACATGTAAGGGCCCG
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82813751/81053995 (Hg38)
End
82813751/81053995 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/5501442; hsa-mir-107/Downstream/5210699;
Nearest TSS
ENST00000439456/Upstream/404198; ENST00000404547/Downstream/821319;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/517559, chr10-CpG: 149/Downstream/820298
Upstream sequence
TGGGAGAGAGCTTTGATGTGGTTCGATACACCAATACCATTGTGTATTTCAACTCTGAGGGCACAGAGCTGAAAGGATGTAAGCCTGGGTCCTGGGTGGG
Downstream sequence
TAAAGCCTGCCTGGAGCTGGGGAAGATGAGAAGAGGAAGGCCTGCGGAGGGCCCAGTGAACGAGACCTGAGCTCAGCCTCTGTGCCCTGGAGTCCTCCTG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate