Basic Information
VIS ID
TVIS42001129
Fusion event
EBV-trnA integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
118677
Orient
-
Integrated sequence
AGGGGCGCTAGTCGTGGTCAAGGTCGTAGACTGGTTTGTGCTAGGACCCGATGCCGACGGTGATGGTGTAGTCACAGCCGTTGTGCCTGTCACGTTCCCC| |GCCGAGGCCGTCGAACTGCCACTAGATGTCCAAATAAGGCTTGTCTCACAGATGAGTATCATGGCCATAACAGCGCCTGCCTTGTCTCTGGCGTGTGCCA
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
22020697/22521371 (Hg38)
End
22020697/22521371 (Hg38)
Orient
-
Location type
upstream
Target gene
trnA
Nearest miRNA
hsa-mir-1180/Upstream/3176797; hsa-mir-10226/Downstream/4772539;
Nearest TSS
ENST00000595228/Upstream/101349; ENST00000540040/Downstream/1740;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3508, chr17-CpG: 22/Downstream/31204
Upstream sequence
tggtgcatgcctgtaatcccagctactcgctaggctgaggcaagagaattgcttgaacccaggaggcggaggaggttgcagtgggccgagattgcaccat
Downstream sequence
ACGTTCCCCTTAAATAAGACATCACGATGGATCACGGGTCTATTACCCTATTAATCAGTCACGGGAGCTCTCCATGCATTTGGTATTTTAATCTGGGGGG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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