Basic Information
VIS ID
TVIS42001130
Fusion event
EBV-LOC105373171 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111827
Orient
+
Integrated sequence
AGTGGAGGCTTCCCGGTAATTTCCCACAGCGTCCACCATATATCTTTCTGCCTCTCCCGTTAGAATTAGGCAAGGATCATACGTGTCCACCGGCCTTTTA| |TACTGAGCGTTTAGGTTTTGTTTATGTAGCAAGCACAAAAGGCACACACGAGTGATGCAAAAGGGTTCCTGAGGCAGCAGGCAGAGCTGTTTTGCCATTT
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
232219560/232083814 (Hg38)
End
232219560/232083814 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC105373171
Nearest miRNA
hsa-mir-101-1/Upstream/1063890; hsa-mir-1537/Downstream/1540338;
Nearest TSS
ENST00000473358/Upstream/264909; ENST00000428673/Downstream/76277;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/456445, chr1-CpG: 173/Downstream/545528
Upstream sequence
GTATTATAGCTTTCAGTGACGTCACATGGTATTTGGGTTTCTCCTAGACTTACTGTGGCTCACGTAAAGTGAGATGCTTGGTTAATAAAACACTTCATAT
Downstream sequence
AATTTCATAACTAGTAGGTCTCAGCAAACACTGATTTAGTCAGTGAATAAATGAAAAGCAAAGAAGGGAAGAAAAGGAGGGAGAGAAAGCGACTGGTTCT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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