Basic Information
VIS ID
TVIS42001131
Fusion event
EBV-chr12:q14.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85753
Orient
-
Integrated sequence
GCCATGGCCGCCTCAGCGGTGACACAGGCACCCACGGAATATACCAGGGAAAGGAGGGGAGTGGGGCCTATGCCTCCCACCGATATTCCGCCGTCTAAAC| |GAGCGAAGATCGAGGCCTATACAGAGCCCGAGATGCCGCACGGGGGGGCCTCGCACTCTCCCGTCGTTATCTTGGAGAATGTCGGCCAGGGGCAACAGCA
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
59105444/58711662 (Hg38)
End
59105444/58711662 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC02388 ; LOC100506869
Nearest miRNA
hsa-mir-1228/Upstream/886970; hsa-let-7i/Downstream/3548697;
Nearest TSS
ENST00000382841/Upstream/119960; ENST00000548969/Downstream/70054;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/775441, chr12-CpG: 100/Downstream/208116
Upstream sequence
tcaatagcaaagaagtggaagcaacctaatccccatgaattaagggataaatgaaatgtggttcatccattcaatagaacattatttagtctttaaaata
Downstream sequence
gacggaaactctaaaacatactgcaaaatggctgaaccttgaagacattgtgctaagtgaaagaagctagaacaaaattataaatattggctgggtgcag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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