Basic Information
VIS ID
TVIS42001133
Fusion event
EBV-chr8:q24.21 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85810
Orient
+
Integrated sequence
GGAGTGGGGCCTATGCCTCCCACCGATATTCCGCCGTCTAAACGAGCGAAGATCGAGGCCTATACAGAGCCCGAGATGCCGCACGGGGGGGCCTCGCACT| |CTCCCGTCGTTATCTTGGAGAATGTCGGCCAGGGGCAACAGCAGACTCTGGAGTGCGGAGGAACTGCTAAACAGGAAAGGGACATGTTGGGGCTGGGGGA
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
129680171/128667925 (Hg38)
End
129680171/128667925 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1204/Upstream/517737; hsa-mir-10400/Downstream/816132;
Nearest TSS
ENST00000518652/Upstream/571406; ENST00000519048/Downstream/298076;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/817947, chr8-CpG: 122/Downstream/1271201
Upstream sequence
TTGCATTGGGGCACAATAACAGGCTGACATAAGCAATTCCTGACTATAATCTTTTGTTGAGTAATCTGAAAGTAAATAAAAAACTGTTTAAAATAGCATT
Downstream sequence
ttaaaagaatatttaagaggtaaactatcaatatttcacattttcatccactccccttccttctccccagggtggcatctaggagtatCCGAAAGCTTTC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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