Basic Information
VIS ID
TVIS42001135
Fusion event
EBV-chr10:q26.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
169503
Orient
+
Integrated sequence
AGGTCGTTGGCGGCAGGCGGGAGGCCGTGCTTTAGGGGGGTTCAGGTGAGGCAAGGCTGTGGGGTAACCGTAGGGGAGGCGGGTGAGGCGGCTAAGAGGG| |CTAAGGGTCGGCGGGTGACGAAGCAGCAGACGGCGGATATGGGAATTTCAGAATGAGGTGGCGGATTCAGGCGAAAAGGGTGTGGGCTGTGCGAGTGTCA
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134611933/132798429 (Hg38)
End
134611933/132798429 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/1835761; hsa-mir-202/Downstream/449082;
Nearest TSS
ENST00000439456/Upstream/12377; ENST00000461291/Downstream/14375;
Nearest CpG islands
chr10-CpG: 116/Target, None/Upstream, None/Downstream
Nearby gene
CFAP46(+9963) ;
Upstream sequence
CCCTGGGCCAGGCCTGCCTGCGGATGGTTAGTGGTTGCTGTGGGGGCTGGGATTCCCCACCACAGCATGTGTAAGCCAGGTTTTTAACATTTAGCTCAAT
Downstream sequence
CGTTTACTCCTGGGCAGGGGCCAGGTGTATGGATTTTACTGTTTGAAGAAGGGGAGGTGGATGGTGGATGGTTGCTAACAGGGAGTTAATTGGTTCTCCC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate