VISDB Viral Integration Site DataBase

VIS ID

TVIS42001136

Fusion event

EBV-CHCHD3 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

11427

Orient

+

Integrated sequence

CAAATTTTAGATCAGATGGCATAGAGACAAGGACACCGAAGACCCCCAGAGCCCTCATCGCAGGGTTCTTACCATGCGGCCATGTAGGCCCACTTAACAC| |TACAAGACCTACGCCTCTCCATTCATCATGTAACCCACAAATCATCTAAACCGTAAGTCTAAGGGCCTCCTGAGGTTTTCTCAGGAGGCCCTAATGTATA

Chromosome

chr7

Cytoband

q33

Reference genome

Start

End

132639959/132955199 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-6885-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4439 ; hsa-mir-3977 ; hsa-mir-3136-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-2115-5p ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-3938 ; hsa-mir-6800-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5581-3p ; hsa-mir-136-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-148a-5p

Nearest miRNA

hsa-mir-10525/Upstream/2077660; hsa-mir-10399/Downstream/79661;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/377431, chr7-CpG: 54/Downstream/126550

Upstream sequence

AAATAATAAAGCATCTCAAGTGTTCCTATTTTGGAGGTGGGAGAAAATTTTCAAATGAGCCTGGTATGGCATAGTCAAAAGCAGAACCAACATGGAACCT

Downstream sequence

gtgtgtgtgtgtgtgtTGCGGGGTGGGCTGGAAGACATTCCTCAATCAACTATTGTTCTTCCCTACCTATGCAGAAAAGACCCACAACCATGGTCGTGAA