Basic Information
VIS ID
TVIS42001138
Fusion event
EBV-chr6:q12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78036
Orient
+
Integrated sequence
TGGTTGGCTGGTAACTACTGGGGTGGGACTTGTTCCTCCTAAGGTGTGGTTGGTGGCATTTGCCTGTGGACTTGTTTCTCCCACAGTAGGGCCGGTGGCA| |TTTGGGGTTGGGGTAGTCACTGCTGAGGTGGGGCTTGTTTTTCCCAAGGTGGGGCTGGTGGCATTTGGGGTTGGGGTAGTCACTGCTGAGGTGGGGCTTG
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
68343182/67633289 (Hg38)
End
68343182/67633289 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/10243077; hsa-mir-10524/Downstream/3743671;
Nearest TSS
ENST00000381078/Upstream/1926064; ENST00000449928/Downstream/256050;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1538351, chr6-CpG: 37/Downstream/1001551
Upstream sequence
TGTTATCTTTCACCTCTGGAGTGTTCACAAAATCTATTTTTATTTTCTGAAGGAGTACAGCGTGTATATATTAAACACAGCTAAATGAACCGAGAAAGAA
Downstream sequence
tatgaagacagtgcttgcttcccctttgccttctaccatgattataagttttttgaggtctccccagtcatacttcttttacagcctctagaaccgtgag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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