Basic Information
VIS ID
TVIS42001139
Fusion event
EBV-LINC02303 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
1024
Orient
+
Integrated sequence
TCCTTCTCATGCTCCTATGGACACTTGGTAAGTTTTCCCTTCCTTTAACTCATTACTTGTTCTTTTGTAATCGCAGCTCTAACTTGGCATCTCTTTTACA| |GTGGTTCTCCTGATTTGCTCTTCGTGCTCTTCATGTCCACTGAGCAAGATCCTTCTGGCACGACTGTTCCTATATGCTCTCGCACTCTTGTTGCTAGCCT
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
46175575/45706372 (Hg38)
End
46175575/45706372 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02303
Nearest miRNA
hsa-mir-208a/Upstream/8753981; hsa-mir-1185-1/Downstream/2054623;
Nearest TSS
ENST00000550708/Upstream/138377; ENST00000555246/Downstream/8048;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/452773, chr14-CpG: 30/Downstream/945293
Upstream sequence
TATCTTAGATTACATTTCACATAGGACAGAAATCACATTTCTCAAATTTATTTTGTATAGTGCCAATTACAGTATCATGCACTGGGTTGGACTCACCTAG
Downstream sequence
CTTCAATTTTAATCTGCAATTGCAAATTCCATAGTCCCTTTTGTTTGCATATCCTCAGGGTTTTGTTCTGCCAAATCGTTGGCTCACCACTTTCCATGGT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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