Basic Information
VIS ID
TVIS42001140
Fusion event
EBV-chr2:p13 integration
Validated
Yes
Detection method
RT-PCR
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
26819646
Virus Sequence
Virus name
EBV
Reference genome
V01555
Start
172250
Integrated sequence
CGTGACCAAGGGGCCCGTGGGTGACACAGGCAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGG| |GGGGTCGGATTTCGCCCTTATTGCCCTGTTT
Host Sequence
Chromosome
chr2
Cytoband
p13
Reference genome
AC009970
Start
113504
End
(Hg38)
Location type
intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
CAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGGCACCAGAGCTCAGGCCTGCTCCTCAACATCATGAGTTACGACCAGGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Xiao, K., et al. Genome-wide Analysis of Epstein-Barr Virus (EBV) Integration and Strain in C666-1 and Raji Cells. J Cancer,2016,7(2): 214-224.
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