Basic Information
VIS ID
TVIS42001143
Fusion event
EBV-chr4 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Perfect
Reported year
2019
PubMed ID
30867819
Virus Sequence
Virus name
EBV
Reference genome
V01555
Start
7686
Integrated sequence
CCAGATATAGATTAGGATAGCATATGCTACCCAGATATAGATTAGGATAGCCTATGCTACCCAGATATAGATTAGGATAGCATATGCTACCCAGATATAG| |ATTAGGATAGCATATGCTATCCAGATATTTGGGTAGTATATGCTACCCAGATATAAATTAGGATAGCATATACTACCCTAATCTCTATTAGGATAGCATA
Host Sequence
Chromosome
chr4
Reference genome
AC017007
Start
142764
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
TTCTGTTATGGGTTTCTTTTTCTTTCTTTTTTTTTTTTTTGAGATGGAGTCCCGCTATATCTGGGTAGCATATGCTATCCTAATCTATATCTGGGTAGTATGCTATCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Xu, M., et al. Genome-wide profiling of Epstein-Barr virus integration by targeted sequencing in Epstein-Barr virus associated malignancies. Theranostics,2019,9(4): 1115-1124.
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