Basic Information
VIS ID
TVIS43000038
Fusion event
MCV-PTPRG integration
Validated
Yes
Detection method
RACE
Data source
Curated
Sample type
Tumor
Disease
Merkel cell carcinoma (MCC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
18202256
Virus Sequence
Virus name
MCV
Reference genome
EU375803
Start
2140
Integrated sequence
CTTGCCAAAAGTGTGAAAACAGATCTCGCCTCAAACCTCACAAGGCTCATGAGGCTCATCATTCTAATGCTAAGCTATTTTATGAATCTAAATCTCAGAA| |AACCATTTGCCAACAAGCCGCAGACACTGTTCTAGCCAAAAGGAGGTTAGAGATGCTGGAAATGACCAGGACAGAAATGCTATGTAAGAAGTTTAAGAAG
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
Not given
Start
61561985
End
(Hg38)
Location type
intron1
Target gene
PTPRG
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-19b-3p ; hsa-mir-342-5p ; hsa-mir-624-5p ; hsa-mir-193b-3p ; hsa-mir-10a-5p ; hsa-mir-19a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4671-3p ; hsa-mir-7844-5p ; hsa-mir-218-5p ; hsa-mir-6867-3p ; hsa-mir-4685-3p ; hsa-mir-642a-5p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6854-3p ; hsa-mir-4282
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Feng, H., et al.Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science,2008,319(5866): 1096-1100.
Curate