Basic Information
VIS ID
TVIS43000049
Fusion event
MCV-ECH1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Merkel cell carcinoma (MCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
MCV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
End
39307703/38817063 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10395/Upstream/3471436; hsa-let-7e/Downstream/592560;
Upstream sequence
tggtttccggagctggttgctgcacaggttttgggccacagttttgttgccatgtatggattggccattgtccTGCACCTCTTCTGCCTCTTACCAGGAG
Downstream sequence
CCTTCACCTGGAAGAAAGCATCCTGGGCACAGTACCGGATGTCACAGGCGGTGACAAGGTCCACACCTAGGAGGTAGAGGCCAGGGATGCTGAATGACCA
Reference
Starrett, G. J., et al. Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma. MBio,2017, 8(1).
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