Basic Information
VIS ID
TVIS44000044
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
96518716/96053160 (Hg38)
End
96518716/96053160 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1M
Nearest miRNA
hsa-mir-101-1/Upstream/1509381; hsa-mir-11399/Downstream/1992082;
Nearest TSS
ENST00000473358/Upstream/42464; ENST00000460706/Downstream/320965;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/818574, chr1-CpG: 64/Downstream/668386
Upstream sequence
gctcttttttggttccatatgaactttgaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaatta
Downstream sequence
ccttgggcagtatggccattttcacaatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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