Basic Information
VIS ID
TVIS44000065
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
19628752/19725439 (Hg38)
End
19628752/19725439 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/380865; hsa-mir-10226/Downstream/7568471;
Nearest TSS
ENST00000595228/Upstream/6380; ENST00000580884/Downstream/12243;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/454, chr17-CpG: 46/Downstream/19289
Nearby gene
SLC47A2(-8709) ;
Upstream sequence
CACGCCCTTCGTGAGGTTGTTTGTTTAACCCAACTGGAATGAGAGAAAGGAAATACATAATTTAAGCTCACTtcagatagacttggattacattctgatt
Downstream sequence
ctgccactttttcgttgtgttgaccttgggcgagtcatttactctctttagtttgttccttccttgtaataaaattacatatgatccagcaactccattt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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