Basic Information
VIS ID
TVIS44000093
Fusion event
HTLV-1-CAMTA1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
End
7347950/7287890 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/857994; hsa-mir-101-1/Downstream/1578612;
Nearest cancer related gene
CAMTA1(TSG, No orient, 0)
Upstream sequence
ttctattgtgtggctccaccatcctagagtccttgtttctcatccctgaggacagggaagagagtgaaggtgttgtagcagccaggcctggaagtggcat
Downstream sequence
acatcaattttaccttcatttcattggccagaactcagtcccatggccagtctaactacagaggaggctgggaaatacagtctttctttgtccaggaaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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