Basic Information
VIS ID
TVIS44000100
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
End
59444052/59676579 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/81421; hsa-let-7a-2/Downstream/532492;
Nearby gene
PATL1(-7541) ;
Upstream sequence
cacctcctgggctcaagccattctcccatctcagcctcccaagtagctggggctataggcgggcaccatcatgcccggctaatttttgtattttttgtag
Downstream sequence
ggacagggcttcgccacgctgccTGTACCTGGCTtcacaaatgttcttaatggcatttaggatggtaaatcctttccaggtttttttgttttgTTTTGTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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