Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene2024216920190894202010752017667120178822201791662018000520209420
Basic Information
VIS ID
TVIS44000106
Fusion event
HTLV-1-OR11H5P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
End
20677579/20209420 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1185-1/Downstream/813894;
Nearby gene
OR11G2(+11047) ;
Upstream sequence
TTTCCTGGTTGTCAGGAGATGCAAAGTTTCCTCTTCTCCCTGTTCTTTGTGATCTATGTATTTACCATAATAGGAAATGGGACCATTGTCTGTGCTGTGA
Downstream sequence
GATTGGACAAACGGCTTCATACCCCAATGTATATTCTCCTAGGGAACTTTGCTTTCCTTGAAATCCGGTAAGTTACTTCCACTGTACCCAACATGCTAGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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