Basic Information
VIS ID
TVIS44000127
Fusion event
HTLV-1-LOC105374060 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
118486512/118767665 (Hg38)
End
118486512/118767665 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374060
Nearest miRNA
hsa-let-7g/Upstream/1917298; hsa-mir-12124/Downstream/1316899;
Nearest TSS
ENST00000440867/Upstream/209997; ENST00000477009/Downstream/162588;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/769948, chr3-CpG: 98/Downstream/266580
Nearby gene
IGSF11(-132967) ;
Upstream sequence
AGAGTAGTATGGAAAAAACAATATGTTACAGCTTGGGCTGTATCTCCTTAGTTGCTCCTGTGTCACCCATATTCAATCATTCTACCAACATTGAAAGCCG
Downstream sequence
GATGTCACCAAGACATCATGCTTGTGTTGGAGAAGGGAAGAATGCAACACTTCCCCTGCTCTCAAAAATGCATATAATTTCATCAGGACAGTCTCAGAAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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