Basic Information
VIS ID
TVIS44000157
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
GRCh37/hg19
Start
23658913/23084774 (Hg38)
End
23658913/23084774 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4499/Upstream/2650928; hsa-mir-1267/Downstream/1077642;
Nearest TSS
ENST00000623511/Upstream/153237; ENST00000218867/Downstream/85823;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/157515, chr13-CpG: 93/Downstream/74895
Nearby gene
SGCG(+96147) ;
Upstream sequence
cgaatgtggagctgacagaaatgaacatttgattattcagtgcagggactatcctcagaacataatggtgagtacagtcacatagcaaggatggttaaag
Downstream sequence
ccctaagaagagatggaaccacttggactgcatggcagttggggcccaggaccaagctgtggggagctccagcattcaggggccgcagaggggacccagc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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