Basic Information
VIS ID
TVIS44000159
Fusion event
HTLV-1-LOC102724227 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
18970436/18817502 (Hg38)
End
18970436/18817502 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724227
Nearest miRNA
hsa-mir-1244-3/Upstream/1144108; hsa-let-7i/Downstream/5394919;
Nearest TSS
ENST00000382841/Upstream/79401; ENST00000540972/Downstream/312250;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2905902, chr12-CpG: 131/Downstream/311889
Nearby gene
CAPZA3(+78314) ;
Upstream sequence
ACACTCATCTCACCTCACACCAACCTGCAAGTTGGACTTAGTACTTTGAAATATCACAGACATCCAAACATAGATCACATAGATCCAGCTATTCAATGTA
Downstream sequence
TGATCCACACACAAAAAGATGTGTTATTGAAGTTTTTGTGAGAAGACTGCAAAGAGGATTTATATTTCTTACAGTGTAGCTAAACTTCCATTGTCTTTCA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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