Basic Information
VIS ID
TVIS44000165
Fusion event
HTLV-1-LOC101929485 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
106250065/106531218 (Hg38)
End
106250065/106531218 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101929485
Nearest miRNA
hsa-let-7g/Upstream/3007102; hsa-mir-12124/Downstream/3071610;
Nearest TSS
ENST00000440867/Upstream/661666; ENST00000473550/Downstream/598773;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/661844, chr3-CpG: 49/Downstream/709344
Nearby gene
LINC00882(No orient, 578572)
Upstream sequence
aaattcatgtggaaccaaaaaagagcctgatatggtttggctgtgtccccacccaaatctcatcccataattcctacatgttgtggaaggaaaccagtgg
Downstream sequence
gagataattgaatcataggggcagtttcccccatactgttctcgccatagtgaataagtctcatgtgatctgatgtttttataaggggtttccactttca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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