Basic Information
VIS ID
TVIS44000178
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
129177331/128256176 (Hg38)
End
129177331/128256176 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2748869; hsa-mir-1305/Downstream/15087284;
Nearest TSS
ENST00000502981/Upstream/76829; ENST00000505133/Downstream/16885;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/193853, chr4-CpG: 133/Downstream/30966
Nearby gene
PGRMC2(-13061) ;
Nearest cancer related gene
PGRMC2(TSG, -13061) ;
Upstream sequence
caggtaagagctgatgtttcagtcttgagtccaaaatctgcagagcaggccaataggctgaaaactcaggcagggcttctgtgttgaaatactgaggaag
Downstream sequence
aacggctttttttttttcaggaaacctgtttgctcttaaattcttcaactgattggatcaggcccatccacattatggagggtgatctgttttactttac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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