Basic Information
VIS ID
TVIS44000179
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
39750106/39782330 (Hg38)
End
39750106/39782330 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/707949; hsa-mir-10398/Downstream/1816393;
Nearest TSS
ENST00000381078/Upstream/56925; ENST00000405961/Downstream/9968;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/57046, chr6-CpG: 30/Downstream/9960
Nearby gene
DAAM2(+10053) ;
Upstream sequence
gtatagcctactatacacctatgctatatggtatagcctattgctcctaggctataaacctgtacagcatgttactgtattgaataatgtaggcaattgt
Downstream sequence
aataaaatgaaaattattgtgtatctaaacaagtctaaacattgaaagggtacagcaaaaacatggtattataatcttatgagaccactgtcatatatgc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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