Basic Information
VIS ID
TVIS44000180
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
53621212/53553519 (Hg38)
End
53621212/53553519 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/8671719; hsa-mir-10399/Downstream/3402266;
Nearest TSS
ENST00000635602/Upstream/36403; ENST00000629899/Downstream/14730;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/334020, chr7-CpG: 48/Downstream/988522
Nearby gene
LINC01446(No orient, 101990)
Upstream sequence
ACCTAATGGTAAATATTTCTAAAACTACCTGCCTGATTATTTCTTTGTAATTTGTTTTTACCTGTTTTTTTCTTCCTCTTACAGTAGAGTGTGAAAATAG
Downstream sequence
TAAAATAGTAAAACAGTATAATGCCTTCCTTCTTCTAACATCTTCTCTAGCTTGAAGAAACACTGTAAAATAAGTCAACTCTAATTTTATATCTGTGTAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate