Basic Information
VIS ID
TVIS44000185
Fusion event
HTLV-1-LOC440434 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
36374308/38218246 (Hg38)
End
36374308/38218246 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC440434
Nearest miRNA
hsa-mir-1180/Upstream/603207; hsa-mir-10226/Downstream/484016;
Nearest TSS
ENST00000595228/Upstream/25705; ENST00000619548/Downstream/78777;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/35570, chr17-CpG: 63/Downstream/38512
Upstream sequence
cagtggcatgatctcggttcactgcaacctccacttcctgacttctggcgattttcttgcctcagccttctgagtagctgggattatagggatgagccac
Downstream sequence
cacactgggtaatttttgtattttttggtagagatggggttttgccatgttggccaggctggtccctaactcctggcttcaagtgatcagcccgccttgg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate