Basic Information
VIS ID
TVIS44000229
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
111249523/110811719 (Hg38)
End
111249523/110811719 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/978283; hsa-mir-1178/Downstream/492423;
Nearest TSS
ENST00000382841/Upstream/68780; ENST00000551161/Downstream/20060;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/68496, chr12-CpG: 34/Downstream/35194
Nearby gene
CCDC63(+35241) ;
Upstream sequence
AGCCCCCTGGCATATTTGAACACCAATGCCAGGCAGAGCTGTTGGTGCCTCCCATGCATTAAGAAATGGCAGCTGCTGCTGATGTCCCCAGATGAAAATG
Downstream sequence
ACTAAGGAGGGCTAAAGCCAAGCAATGTCACTGCTACCCCTGATGCATACACTCACAGGAGCCTTCTGGTTTCCAGGGTCCTCCTCTATCCTGTCTTGGC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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