Basic Information
VIS ID
TVIS44000231
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
105265127/104798790 (Hg38)
End
105265127/104798790 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1185-1/Upstream/121041; hsa-mir-12121/Downstream/66524;
Nearest TSS
ENST00000550708/Upstream/3039; ENST00000555360/Downstream/1806;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2688, chr14-CpG: 156/Downstream/1317
Nearby gene
ZBTB42(+2391) ;
Upstream sequence
tgactaaggagtggactttcagcagagacagggatgaagagaaaccagtgaagggttctttggggaagaacattccagagcctgagagcttgctgagtgc
Downstream sequence
caggccctgtcgttaatgttcacgaagaccccgggatgcactctgactcccattttgcagatgaggattactgaggttcaaagaggttaaaggtttggtc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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