Basic Information
VIS ID
TVIS44000247
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
232877392/232741646 (Hg38)
End
232877392/232741646 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/1721722; hsa-mir-1537/Downstream/882506;
Nearest TSS
ENST00000473358/Upstream/23575; ENST00000418460/Downstream/1069;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/110862, chr1-CpG: 69/Downstream/63662
Upstream sequence
aaaataatgatagcaatgatagcaatgcctacctcctaatgttgtttaaacataaaatcactggagacataaaatgcccagtacagtgcttggcacatag
Downstream sequence
caggtatggtaaatcatacctattatAATCAAACTGACTTTTTCTAAAGTGAAAAAAATTATATCTGGCTAACATATTACCTTATAGCTCTTTTAGTCCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate