Basic Information
VIS ID
TVIS44000250
Fusion event
HTLV-1-LINC00390 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
44682177/44108041 (Hg38)
End
44682177/44108041 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00390
Nearest miRNA
hsa-mir-2276/Upstream/2539646; hsa-mir-1267/Downstream/88088;
Nearest TSS
ENST00000623511/Upstream/82722; ENST00000444663/Downstream/2410;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/136829, chr13-CpG: 34/Downstream/33696
Upstream sequence
tatccaatgaagctaaaaatccctaccttgcaggttgttgtgatgatgaaagctgtttctcgaccttaagtacacattagaattccctggcgagccttaa
Downstream sequence
catgccaatgccctggtcctacccaatcagtctttggagagtagacccaggcaccagtattttgaagattcctgggagattcctaagcgaaccctaggtt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate