Basic Information
VIS ID
TVIS44000251
Fusion event
HTLV-1-ANKRD20A9P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q11
Reference genome
GRCh37/hg19
Start
19427006/18852866 (Hg38)
End
19427006/18852866 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
ANKRD20A9P
Nearest miRNA
hsa-mir-1267/Downstream/1580912;
Nearest TSS
ENST00000623511/Upstream/180039; ENST00000447784/Downstream/52573;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/127185, chr13-CpG: 33/Downstream/21999
Upstream sequence
ATCAGTGCAGTACTTATTGAAAATGAGTATTTTGGTATTCACAGAATGAATTTTATAATACAATTGCTTCTAAAATTAACTAAGTTTGGTATATCATCTT
Downstream sequence
ACACTGTAAAGGACTTTTATAAAGCAGCTATCATATCAAAGAACTGGCTGTCTCAAAAAAAATTAGCCAAAGCATCTATATGCAACTTAATCACATCTTA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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