Basic Information
VIS ID
TVIS44000258
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
105787463/105171006 (Hg38)
End
105787463/105171006 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2738640; hsa-mir-10b/Downstream/3970484;
Nearest TSS
ENST00000437798/Upstream/26864; ENST00000258456/Downstream/70737;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/26446, chr2-CpG: 16/Downstream/65668
Nearby gene
UTAT33(No orient, 68061)
Upstream sequence
GTACCCAGCTTTCTGATTTAAGCAGTAGGAGTACAGGGTGTTATTAGCTAGAAGGAGGGAGTTGGGGTAGGGGGAGGAGCAAAGCATTATTGGGATACAG
Downstream sequence
ATTTGGTTGTTTAAACAAAGACCAAAACAAAacatacacacacacgcacacacacacacacaacacacacatgcacaAAGTGACTTAGACAACATTATTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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