Basic Information
VIS ID
TVIS44000269
Fusion event
HTLV-1-LOC105374425 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
41849642/41847625 (Hg38)
End
41849642/41847625 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374425
Nearest miRNA
hsa-mir-12113/Upstream/1345506; hsa-mir-1243/Downstream/5805044;
Nearest TSS
ENST00000502981/Upstream/97280; ENST00000510383/Downstream/34218;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/95695, chr4-CpG: 20/Downstream/17743
Nearby gene
LINC00682(No orient, 31897)
Upstream sequence
TGCAATGTGAGGAATCTTTACCCATATTCCAGTTAATCCTTGCaacaataacaatactaataaacacttacatacatctttgtgtcaagcactgttctga
Downstream sequence
atactttgcatgtattctcacattaactctccgaagtatatgttatccccatcttacagatgaagaaactgaagtacaaatagaaaaattgaggcactgg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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