Basic Information
VIS ID
TVIS44000290
Fusion event
HTLV-1-LINC02393 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
128381483/127896938 (Hg38)
End
128381483/127896938 (Hg38)
Orient
+
Location type
ncRNA_exonic
Fragile sites / regions
FRA12E
Target gene
LINC02393
Nearest miRNA
hsa-let-7i/Upstream/2981279; hsa-mir-3612/Downstream/397154;
Nearest TSS
ENST00000382841/Upstream/15294; ENST00000540882/Downstream/18434;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/135647, chr12-CpG: 196/Downstream/369558
Upstream sequence
GACCAGGTGATGCACACATGCAAATTCAGTGGCCGTGCAGAAGTTTCAAGATCAGGGCGAGGGAAAAGACAGACAGTAAATGACACTGCAGAGGCAACAC
Downstream sequence
TAACAAGCAAGGTTCTGCAGGGGCTGAACATCATATTCATCAAACTTTGGAGTTTGCCCTCAGAGATCCCCCTCCTGGAGCAGGGGAATTCCTGATCTAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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