Basic Information
VIS ID
TVIS44000307
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.22
Reference genome
GRCh37/hg19
Start
147504268/146583116 (Hg38)
End
147504268/146583116 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/174428; hsa-mir-1305/Downstream/761513;
Nearest TSS
ENST00000502981/Upstream/61152; ENST00000281321/Downstream/55777;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/60206, chr4-CpG: 33/Downstream/53963
Nearby gene
POU4F2(+55777) ;
Upstream sequence
CTCAAGCGGTTTTAGTAGTTTATCACCATGACCAGTAGATGGTATTGTTGGCCCAAGATAGTTTGGTTGCTGTTTGCTGTTCAGCACAGAGTGGAAAAGG
Downstream sequence
GAAGGAAAGGAGGTTACAGATGGACTATGAGAGAAGGCAGTGTGTCTTCCACTTGGTAAAATGTAAAGTATACTGGTAGATTTAGGAGATATCCTTATCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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