Basic Information
VIS ID
TVIS44000311
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
43010723/43010621 (Hg38)
End
43010723/43010621 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/4453060; hsa-mir-103a-1/Downstream/10940883;
Nearest TSS
ENST00000502646/Upstream/3078; ENST00000506791/Downstream/7808;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/9932, chr5-CpG: 67/Downstream/7245
Nearby gene
LOC648987(-4108) ;
Upstream sequence
CCATTCTCTGGGGAAAGAAAATTCTGTGGTGGCTTGTAGGTTCCTCTTTCTTTTCTCTGACCTCTTTTCTCAGTTCTGCTCATTTCACTCCTCTAGTGGG
Downstream sequence
AAGACCTCAACCCTCCTCTCCCTTCCTCTACCCACTGTCAAGGTacacacacacacacacacacacacacacacacacacacagacacaTCCACCTGGGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate