Basic Information
VIS ID
TVIS44000351
Fusion event
HTLV-1-LOC105376755 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
196399902/195535178 (Hg38)
End
196399902/195535178 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/6402067; hsa-mir-1244-1/Downstream/11248056;
Nearest TSS
ENST00000437798/Upstream/2143; ENST00000464301/Downstream/37792;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3339092, chr2-CpG: 150/Downstream/121653
Nearby gene
SLC39A10(+121630) ;
Upstream sequence
GAAATGGAATGAAGTATCTGTTTGTTTGTTTGTTAAGAGCAAGGCAGTGTCATATACTCAGAGAAGGAACTTGGAAGAAGCTTCTTTGAAGAAGTCATAG
Downstream sequence
GTTCACATTCTACTTCCCTTACAAAACGTATAACCTTGGGAAAAAACAtaaaatggagataaattatatctctgcagaatgttataatgataaattaggt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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