Basic Information
VIS ID
TVIS44000357
Fusion event
HTLV-1-CLASP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33743393/33701901 (Hg38)
End
33743393/33701901 (Hg38)
Orient
-
Location type
Intronic
Target gene
CLASP2
miRNAs that regulate target gene
hsa-mir-210-3p
Nearest miRNA
hsa-mir-12127/Upstream/1195512; hsa-let-7g/Downstream/2042575;
Nearest TSS
ENST00000440867/Upstream/13533; ENST00000430877/Downstream/16109;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/260529, chr3-CpG: 86/Downstream/15813
Upstream sequence
ttacaaaaatcaactcaaaaatgtatgagatataaacataaaacctaaaactataaaactactagaagaaaacacaggagaaaatctttacacctggagt
Downstream sequence
acacaaataattcttagagacaacatgaaaagaaacataaaagaaaaaaacataaaagattcttggagacaacataaaattttaaaaattgataaagcag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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