Basic Information
VIS ID
TVIS44000378
Fusion event
HTLV-1-WASHC5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
126043119/125030877 (Hg38)
End
126043119/125030877 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
WASHC5
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-324-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-12123/Upstream/208819; hsa-mir-10400/Downstream/2765085;
Nearest TSS
ENST00000518652/Upstream/12935; ENST00000519140/Downstream/1837;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/31925, chr8-CpG: 39/Downstream/60641
Upstream sequence
tgggaagccacattttaagatggtcaaaaacagactggaacacccagaaaaagtcactcactatggtgagcagcctctaaactgcaagacatcgggaaca
Downstream sequence
ggtggaaggggcttatctaaacattgagaagacctaagacaacagatggcatacaaaatcggaagtgatgttgcaaaggagggagactgcattattctgt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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