Basic Information
VIS ID
TVIS44000382
Fusion event
HTLV-1-AFG3L2P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43116942/43261799 (Hg38)
End
43116942/43261799 (Hg38)
Orient
-
Location type
Intronic
Target gene
AFG3L2P1
Nearest miRNA
hsa-mir-124-1/Upstream/365524; hsa-mir-10400/Downstream/18452989;
Nearest TSS
ENST00000518652/Upstream/65631; ENST00000518278/Downstream/3560438;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/14400, chr8-CpG: 23/Downstream/10045
Nearby gene
POTEA(+30643) ;
Upstream sequence
gcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattgatttttgtataatgtgtaaggaagggatcc
Downstream sequence
agtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttcccctttgcttgtttttctcaggtttgtcaaaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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